AT1G05580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.973 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 23 (CHX23); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1); Has 6204 Blast hits to 6178 proteins in 1654 species: Archae - 257; Bacteria - 4841; Metazoa - 0; Fungi - 132; Plants - 575; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1665594..1668794 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95873.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 867 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSGAPLNVT NPNYDIEESR FGKIVCYDQS LLFEKREQKG WESGSTLASS LPFFITQLFV ANLSYRVLYY LTRPLYLPPF VAQILCGLLF SPSVLGNTRF 101: IIAHVFPYRF TMVLETFANL ALVYNIFLLG LGMDLRMVRI TELKPVIIAF TGLLVALPVG AFLYYLPGNG HPDKIISGCV FWSVALACTN FPDLARILAD 201: LKLLRSDMGR TAMCAAIVTD LCTWVLLVFG FASFSKSGTW NKMMPFVIIT TAIFVLLCIF VIRPGIAWIF AKTVKAGHVG DTHVWFILGG VVLCGLITDA 301: CGVHSITGAF LFGLSIPHDH IIRNMIEEKL HDFLSGILMP LFYIICGLRA DIGFMLQFTD KFMMVVVICS SFLVKIVTTV ITSLFMHIPM RDAFAIGALM 401: NTKGTLSLVV LNAGRDTKAL DSPMYTHMTI ALLVMSLVVE PLLAFAYKPK KKLAHYKHRT VQKIKGETEL RVLACVHVLP NVSGITNLLQ VSNATKQSPL 501: SVFAIHLVEL TGRTTASLLI MNDECKPKAN FSDRVRAESD QIAETFEAME VNNDAMTVQT ITAVSPYATM HEDICVLAED KRVCFIILPY HKHLTPDGRM 601: GEGNSSHAEI NQNVLSHAPC SVGILVDRGM AMVRSESFRG ESMKREVAML FVGGPDDREA LSYAWRMVGQ HVIKLTVVRF VPGREALISS GKVAAEYERE 701: KQVDDECIYE FNFKTMNDSS VKYIEKVVND GQDTIATIRE MEDNNSYDLY VVGRGYNSDS PVTAGLNDWS SSPELGTIGD TLASSNFTMH ASVLVIQQYS 801: ATKRQAAVTA AAATTVMGAV AGVTGNNLES AGGDAKMTRD AHEPFMKSMY EDEDEDDEED HQYGIHR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)