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AT1G05577.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF966)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 167 Blast hits to 166 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0475eggNOG:KOG1650EMBL:AC007153EMBL:AY800564
EMBL:AY924654EMBL:CP002684EnsemblPlants:AT1G05577EnsemblPlants:AT1G05577.1
entrez:837062GeneID:837062Gramene:AT1G05577.1hmmpanther:PTHR31083
hmmpanther:PTHR31083:SF5HOGENOM:HOG000006408InterPro:IPR010369InterPro:IPR021182
KEGG:ath:AT1G05577ncoils:CoilOMA:KTGYVWQPfam:PF06136
PhylomeDB:Q9SYJ8PIR:F86189PIRSF:PIRSF031043Proteomes:UP000006548
RefSeq:NP_683277.1STRING:3702.AT1G05577.1TAIR:AT1G05577UniGene:At.51161
UniProt:Q9SYJ8
Coordinates (TAIR10) chr1:-:1662643..1664288
Molecular Weight (calculated) 41641.20 Da
IEP (calculated) 9.83
GRAVY (calculated) -0.82
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNGGGGEV RRVNLVYFLS RSGHVDHPHL LRVHHLSRNG VFLRDVKKWL ADARGDAMPD AFSWSCKRRY KNGYVWQDLL DDDLITPISD NEYVLKGSEI
101: LLSSPKEDYP NVEKKAWVTR NGGIDAEEKL QKLKLTSEKI QKESPVFCSQ RSTATTSTVT EESTTNEEGF VLKKQDPKTV SGQRDGSTEN GSGNDVESGR
201: PSVSSTTSSS SYIKNKSYSS VRASHVLRNL MKCGGLDTND AVLVPLNKSR SGAFGPAWED ERRYQYHQQH NARKSFEGAW SGIKMKETIE FCKPKVAPSK
301: PSMAPLCSQC GKLFKPEKMH SHMKLCRGMK NSSANNDLMT SNNTVKPRQQ RCRNIPGNPL GHQRVLTTTL KE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)