AT1G05577.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF966) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 167 Blast hits to 166 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1662643..1664288 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41641.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.83 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESNGGGGEV RRVNLVYFLS RSGHVDHPHL LRVHHLSRNG VFLRDVKKWL ADARGDAMPD AFSWSCKRRY KNGYVWQDLL DDDLITPISD NEYVLKGSEI 101: LLSSPKEDYP NVEKKAWVTR NGGIDAEEKL QKLKLTSEKI QKESPVFCSQ RSTATTSTVT EESTTNEEGF VLKKQDPKTV SGQRDGSTEN GSGNDVESGR 201: PSVSSTTSSS SYIKNKSYSS VRASHVLRNL MKCGGLDTND AVLVPLNKSR SGAFGPAWED ERRYQYHQQH NARKSFEGAW SGIKMKETIE FCKPKVAPSK 301: PSMAPLCSQC GKLFKPEKMH SHMKLCRGMK NSSANNDLMT SNNTVKPRQQ RCRNIPGNPL GHQRVLTTTL KE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)