AT1G04890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.779 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF593 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT4G13630.2); Has 7701 Blast hits to 5611 proteins in 507 species: Archae - 60; Bacteria - 425; Metazoa - 4500; Fungi - 427; Plants - 586; Viruses - 7; Other Eukaryotes - 1696 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1381116..1382546 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47365.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTVQGMKGKR FVTRRSRNGL KNHRRSGRVN CASLRSISSS EAFDETAKTN LMQPYDETCS NDDQKDCGKA GEGTNLSHWP EFEKTVSVNQ QVNSNSSAEQ 101: SFVRNVEKRS VRDLEELLKE ERAARATVCV ELDKERSAAA SAADEAMAMI HRLQDEKAAI EMEARQFQRL VEERSTFDAE EMVILKDILI RREREKHFLE 201: KEVEAYRQLL EETEELECSL IKEKNVPEPE HKQNKDCQER RALLVQELDG TVLDMPYREE GNRDKNRDLY KSDSEVAYSR VRDVYMVKDE TENISKKKNL 301: EESSVGKPKE SLDENSIIVS GIARKLPPLC RPRKKSLSSS GSRRKSMSAV DYERLKIENE VELLRERLKA VQEEREELTR RASLPPLPSK VRATSEKRSW 401: TRSCSMDLHS S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)