AT1G04500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCT motif family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1221757..1224235 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42770.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQDVISSHE QLSMDEITSP LTAQIFDFCD SQLFQETFNQ TSEVTSASNG CGYVENNNTN NFPDKSNSGS NQDHEDNNDN ADLSIIFDSQ DDFDNDITAS 101: IDFSSSIQFP ASDQLQEQFD FTGIQLHQPP NTLYSSSSGD LLPPPLSVFE EDCLSSVPSY NLGSINPSSP SCSFLGNTGL PTYMTVTGNM MNTGLGSGFY 201: SGNIHLGSDF KPSHDQLMEI QADNGGLFCP DPIKPIFNPG DHHLQGLDGV ENQNHMVAQP VLPQLGTEIT GLDDPSFNKV GKLSAEQRKE KIHRYMKKRN 301: ERNFSKKIKY ACRKTLADSR PRVRGRFAKN DEFGEPNRQA CSSHHEDDDD DVGVKEEEQL VDSSDIFSHI SGVNSFKCNY PIQSWI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)