AT1G04450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ROP-interactive CRIB motif-containing protein 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROP-interactive CRIB motif-containing protein 3 (RIC3); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 1 (TAIR:AT2G33460.1); Has 189 Blast hits to 189 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1209006..1209853 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24257.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.39 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 220 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATVKGLLKG LRYITQIFDE EKDKDMQIGF PTDVKHVAHI GSDGPATNVP SWMGDFKPQE NENGQVVSRA DANNNQIGEG VGLQELLPPT DKPKHKKTRR 101: KSETVSQNGS PPRRNSSASA SDMQPKNTRR HHRSRHGSID SSNDPSVRRR RVVSVTTNDM EGSYPLSDSS THSRKSTSRH RKPKGSGGGE LSMKKTKGKT 201: ENPIVESVDT CNDNNISDKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)