AT1G04300.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 15857 Blast hits to 10581 proteins in 945 species: Archae - 20; Bacteria - 1945; Metazoa - 5107; Fungi - 2063; Plants - 631; Viruses - 112; Other Eukaryotes - 5979 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1148818..1153095 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 111024.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||
| Length | 997 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFVIISPCFS VLQIMINFFQ VSIIVHLSAW SLFSLWIPSH VGSFAILEAG WSQFAQFTIS VLSQDLKKSK FSDTLHRFWK KEHDWGWKKF MELPKLKDGF 101: IDESGCLTIE AKVQVIRERV DRPFRCLDCG YRRELVRVYF QNVEQICRRF VEEKRSKLGR LIEDKARWTS FGVFWLGMDQ NSRRRMCREK VDVILKGVVK 201: HFFVEKEVSS TLVMDSLYSG LKALEGQTKN MKARSRLLDA KQLPAPIVSV DKDMFVLVDD VLLLLERAAL EPLPPKDEKG RQNRTKDGND GEEVNKEADE 301: RDERRLTELG RRTVEIFILS HIFSTKIEVA HQEAIALKRQ EELIREEEEA WLAETEQRAK RGAAEREKKS KKKQAKQKRN KNKGKDKRKE EKVSFATHAK 401: DLEENQNQNQ NDEEEKDSVT EKAQSSAEKP DTLGDVSDIS DSVDGSADIL QPDLEDRDSS SVLWDTDALE IHPPSSEGSS RGRGISISTP NGITEGKSHS 501: TMDDSSSTCS NDSIRSGVTN GSYQGNSLNF RNQKSPNKGK NQQVKAMTDA HSLASETDDQ PSTLGTDPKG QNYSSEASNV GESDWVVVSH IQEPEGSRNR 601: IPVGRERKTV QSIVNSVDMD RPKEKSTAVL SSPRNVAKNP SPLTQTKPEK KSISTADGIP NRKVLATGPP SSSQVVLPSD IQSQTVGLRA DMQKLSAPKQ 701: PPATTISRPS SAPIIPAMRP SPITVSSSVQ TTTSLPRSVS SAGRLGPDPS LHNQQTYTPQ SYKNAIVGNS LGSSSSSFNH HPSSHGVVPT TLPSSSYSQA 801: PTSSYQSSFP YSQDGLLWTG RSPSSVNMGM YNNTYSPAVT SNRSLNHMDV QIAQQQAQSM MTDEFPHLDI INDLLEDEQC SNMVYNGSIF NPQPQVFNGQ 901: YSSYHGELLS GGRTRSFGEE GLHYMARGPY GTDGMMPRQW QMTNMDLSLP AMRSNGMEDG TSSAANYHHS YFGLDASNPS FTSGINGYTE FRPSNGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)