AT1G03720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.487 vacuole 0.286 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: ovule, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G17080.1); Has 2156 Blast hits to 2154 proteins in 385 species: Archae - 2; Bacteria - 56; Metazoa - 1002; Fungi - 0; Plants - 537; Viruses - 67; Other Eukaryotes - 492 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:924996..926373 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30906.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.98 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||
| Length | 274 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLDFFSFVG NGEKRAIHWW QTYKAPKVPN EIKREAATAK KKGPTITPVT QTDDNGVRSK LCYLNCNSYK IEICWAIALT RLLQVIYNIT QEYIAGRLRF 101: DHDDLVVHLK MKKTRGKRPG SMKLKNLKDA INHIAVKGLL KKRESKSKAG SDIGHHTKWN FSMEKCPSKD FIKSKVDISP VAIAFDITHN FQFIGNVSKK 201: SNGLSIYNVS GVDMEDGDAG GHVVLIVGYG YTKENKLFFL IQNSWGEDWG VKGFGRIFID DESKTTLVYP DGPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)