AT1G03630.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protochlorophyllide oxidoreductase C | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:907699..909245 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43628.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.71 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 399 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKRRQKPRFS TGIRAQTVTA TPPANEASPE QKKTERKGTA VITGASSGLG 101: LATAKALADT GKWHVIMACR NFLKAEKAAR SVGMSKEDYT VMHLDLASLE SVKQFVENFR RTEQPLDVLV CNAAVYQPTA KEPSFTAEGF EISVGTNHLG 201: HFLLSRLLLD DLKKSDYPSK RMIIVGSITG NTNTLAGNVP PKANLGDLRG LASGLNGQNS SMIDGGEFDG AKAYKDSKVC NMLTMQELHR RYHEETGVTF 301: ASLYPGCIAT TGLFREHIPL FRLLFPPFQK YITKGYVSEE EAGKRLAQVV SDPSLGKSGV YWSWNNNSSS FENQLSKEAS DAEKAKKLWE VSEKLVGLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)