AT1G03510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 33405 Blast hits to 13221 proteins in 227 species: Archae - 0; Bacteria - 37; Metazoa - 55; Fungi - 85; Plants - 32781; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:876258..877547 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47579.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 429 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSYASSCT KLISLTKQLS SYANQGNHEQ ALNLFLQMHS SFALPLDAHV FSLALKSCAA AFRPVLGGSV HAHSVKSNFL SNPFVGCALL DMYGKCLSVS 101: HARKLFDEIP QRNAVVWNAM ISHYTHCGKV KEAVELYEAM DVMPNESSFN AIIKGLVGTE DGSYRAIEFY RKMIEFRFKP NLITLLALVS ACSAIGAFRL 201: IKEIHSYAFR NLIEPHPQLK SGLVEAYGRC GSIVYVQLVF DSMEDRDVVA WSSLISAYAL HGDAESALKT FQEMELAKVT PDDIAFLNVL KACSHAGLAD 301: EALVYFKRMQ GDYGLRASKD HYSCLVDVLS RVGRFEEAYK VIQAMPEKPT AKTWGALLGA CRNYGEIELA EIAARELLMV EPENPANYVL LGKIYMSVGR 401: QEEAERLRLK MKESGVKVSP GSSWCLFKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)