AT1G03490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.908 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAC domain containing protein 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAC domain containing protein 6 (NAC006); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2); Has 1772 Blast hits to 1529 proteins in 129 species: Archae - 0; Bacteria - 33; Metazoa - 146; Fungi - 22; Plants - 1047; Viruses - 89; Other Eukaryotes - 435 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:871874..872906 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32204.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.35 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKILPVGSRF CPTDLGLVRL YLRNKVERNQ SSFITTMDIH QDYPWLLPHV NNPLFNNNEW YYFVPLTERG GKILSVHRKV AARGGSEGGT WRSNDGKKEI 101: KDGHMQKGDG LRASDDLQKV VLCRIRYKKE ANVNEFGLVN HQAHQTQDAL TGFADQLEMM LEGQEDREQK EEADLTGFAD SLETMLEGQE DHEQPEDADL 201: TGFADSLETM LEGHEDREQP EEAELTVTQQ QQQQQQQQQR QEDCDVTQEQ EKDDVMVLIN NPNDALALGN YEIIDLTRVD K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)