AT1G03350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BSD domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1); Has 10642 Blast hits to 5945 proteins in 665 species: Archae - 52; Bacteria - 3714; Metazoa - 2927; Fungi - 1314; Plants - 393; Viruses - 71; Other Eukaryotes - 2171 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:822834..824246 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51897.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 3.98 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.01 | ||||||||||||||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNFFKSVFTE DLDPPETESE SDSPKHSEEH EHPEQEHPEQ SESNDDGGWS FGGLMKTLAT RSESVIETYR RDLEEFGTGL KKEIEVAQGS LGTVGHAIDE 101: LGNTVLKGTA EIIAQGKEAI LAAGNESDSS DNNSSQSFGR RDSFSSKPYS RFDAQIRAVQ GDLNTYCEEP EDSDDYKKWE SAFSLDGKAE EMEKLLEENG 201: DMKGVYKRVV PSMVDHETFW FRYFYRVNKL KQAEDLRANL VKRAISLDDE EELSWDIDDE EESSEKVVEA TKDVSRLKLE GNDGMGGGDV SETVKDEVES 301: TYSVAKVSTQ DEVTSADSVT EVSNVGLKTD KDSEEKKETD SEEVPEEKSF VDAAPPASDE APIQDSVKPT SDEAPIQDSV KPKSDEAAPS QDSAKPDVAA 401: SSSTQQPSEE DLGWDEIEDM SSIDGKETSR SGGSPNRAEL RKRLSAAEED EDLSWDIDED DEEESSSSKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)