AT1G02990.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.569 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:681724..686884 | ||||||||||||||||||||
| Molecular Weight (calculated) | 137001.00 Da | ||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||
| Length | 1238 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFLALTQMLL SLTLMRNSKT SWDIFRKILK VEFLLKIWFG GYGSFLSMYQ RSPVCSRPKT SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV 0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH 0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT 0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY 0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE 0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ 0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD 0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD 0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD 0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA 1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH 1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE 1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)