suba logo
AT1G02780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L19e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2386 (emb2386); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19e family protein (TAIR:AT3G16780.1); Has 1157 Blast hits to 1157 proteins in 410 species: Archae - 291; Bacteria - 0; Metazoa - 330; Fungi - 173; Plants - 159; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Protein Annotations
BioGrid:24642eggNOG:COG2147eggNOG:KOG1696EMBL:AC009525
EMBL:AF424580EMBL:BT010178EMBL:CP002684EMBL:Z18373
EnsemblPlants:AT1G02780EnsemblPlants:AT1G02780.1entrez:839407Gene3D:1.10.1200.60
Gene3D:1.10.1650.10GeneID:839407Genevisible:Q9SRX2GO:GO:0003735
GO:GO:0005730GO:GO:0005829GO:GO:0005886GO:GO:0006412
GO:GO:0009506GO:GO:0016020GO:GO:0022625GO:GO:0022626
Gramene:AT1G02780.1HAMAP:MF_01475hmmpanther:PTHR10722HOGENOM:HOG000231277
InParanoid:Q9SRX2IntAct:Q9SRX2InterPro:IPR000196InterPro:IPR015972
InterPro:IPR015974InterPro:IPR023638InterPro:IPR027547KEGG:ath:AT1G02780
KO:K02885OMA:KMKIAKMPaxDb:Q9SRX2Pfam:PF01280
Pfam:Q9SRX2PhylomeDB:Q9SRX2PIR:G86157PRIDE:Q9SRX2
PRO:PR:Q9SRX2PROSITE:PS00526ProteinModelPortal:Q9SRX2Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_171777.1scanprosite:PS00526
SMART:SM01416SMR:Q9SRX2STRING:3702.AT1G02780.1SUPFAM:0037541
SUPFAM:SSF48140TAIR:AT1G02780tair10-symbols:emb2386UniGene:At.24204
UniProt:Q9SRX2
Coordinates (TAIR10) chr1:-:608120..609391
Molecular Weight (calculated) 24607.80 Da
IEP (calculated) 11.94
GRAVY (calculated) -0.99
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)