AT1G02650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.818 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT4G02100.1); Has 193 Blast hits to 189 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 37; Fungi - 13; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:568704..570418 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 58248.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.58 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||
| Length | 513 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIHPWWKRN RKKVDKYMKN AKDLITSQDP NDIVSALSLL NSTLSISPHH ELALELKARS LLYLRRFKDV AVLLHNYIPS LRIDNEDVSS VFAASSELSS 101: LMLLLPSGSP SHDSSFKCFS YSYLKKKVMA GLSNNSQVQG QWRYLVLGQA CYHLGLMDDA IILLQTGKRL ATAELRRESI CWSEDSFNLS TSESQPQPIT 201: ESEIVSQMLS QTKLFLRRRT AALAALDAGL YSESIRHFSK IIDSRRGAPQ SFLVYCLIRR AFAYKSAGRI ADSIADCNLI LALEPSCIEA LETRAELFRS 301: IRCFPDSLHD LEHLKLLFNS ILRDRSLTGP VWKRHNVRYR EIPGKLCVLT TNIKQMKEKI TNRENGNEDY YSLMGIERGC SRSELNRAYL LLNLRYKSER 401: SMTSIDRFDI IDEQELVSVK NRARMSTLLL YRLIQKGYYA VLSDIETVEA DKAVAIDNRR IETPMDGNKA VAMTVVRKSN DKLDVVVKGV FCRDMAAVGS 501: LISRAGLRQP ITV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)