AT1G02530.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : P-glycoprotein 12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
P-glycoprotein 12 (PGP12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 834511 Blast hits to 387558 proteins in 4042 species: Archae - 14726; Bacteria - 649276; Metazoa - 18491; Fungi - 13092; Plants - 9791; Viruses - 35; Other Eukaryotes - 129100 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:529836..534542 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 136782.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.88 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1273 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MNRDGAGEGD SVSHEHSTSK TDEKAKTVPL YKLFAFADSF DVFLMICGSL GAIGNGVCLP LMTLLFGDLI DSFGKNQNNK DIVDVVSKVC LKFVYLGLGR 0101: LGAAFLQVAC WMITGERQAA KIRSNYLKTI LRQDIGFFDV ETNTGEVVGR MSGDTVHIQD AMGEKVGKFI QLVSTFVGGF ALAFAKGWLL TLVMLTSIPF 0201: LAMAGAAMAL LVTRASSRGQ AAYAKAATVV EQTIGSIRTV ASFTGEKQAI NSYKKYITSA YKSSIQQGFS TGLGLGVMIY VFFSSYALAI WFGGKMILEK 0301: GYTGGSVINV IIIVVAGSMS LGQTSPCVTA FAAGQAAAYK MFETIKRKPL IDAYDVNGKV LGDIRGDIEL KDVHFSYPAR PDEEIFDGFS LFIPSGATAA 0401: LVGESGSGKS TVINLIERFY DPKAGEVLID GINLKEFQLK WIRSKIGLVC QEPVLFSSSI MENIAYGKEN ATLQEIKVAT ELANAAKFIN NLPQGLDTKV 0501: GEHGTQLSGG QKQRIAIARA ILKDPRVLLL DEATSALDTE SERVVQEALD RVMVNRTTVV VAHRLSTVRN ADMIAVIHSG KMVEKGSHSE LLKDSVGAYS 0601: QLIRCQEINK GHDAKPSDMA SGSSFRNSNL NISREGSVIS GGTSSFGNSS RHHSLNVLGL FAGLDLGSGS QRVGQEETGT TSQEPLRKVS LTRIAALNKP 0701: EIPVLLLGTV VAAINGAIFP LFGILISRVI EAFFKPADQL KKDSRFWAII FVALGVTSLI VSPSQMYLFA VAGGKLIRRI QSMCFEKAVH MEVSWFDEPE 0801: NSSGTMGARL STDAALIRAL VGDALSLAVQ NAASAASGLI IAFTASWELA LIILVMLPLI GINGFLQVKF MKGFSADAKS KYEEASQVAN DAVGSIRTVA 0901: SFCAEEKVMQ MYNKQCEGPI KDGVKQGFIS GLGFGFSFFI LFCVYATSFY AAARLVEDGK TTFIDVFQVF FALTMAAIGI SQSSTFAPDS SKAKVAAASI 1001: FAIIDRKSKI DSSDETGTVL ENVKGDIELR HLSFTYPARP GIQIFRDLCL TIRAGKTVAL VGESGSGKST VISLLQRFYD PDSGQITLDG VELKKLQLKW 1101: LRQQMGLVGQ EPVLFNDTIR ANIAYGKGSE EAATESEIIA AAELANAHKF ISSIQQGYDT VVGEKGIQLS GGQKQRVAIA RAIVKEPKIL LLDEATSALD 1201: AESERLVQDA LDRVIVNRTT VVVAHRLSTI KNADVIAIVK NGVIAENGTH ETLIKIDGGV YASLVQLHMT ASN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)