AT1G02420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.486 cytosol 0.231 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G61360.1); Has 33079 Blast hits to 11325 proteins in 263 species: Archae - 4; Bacteria - 36; Metazoa - 353; Fungi - 350; Plants - 31222; Viruses - 0; Other Eukaryotes - 1114 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:493683..495158 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56559.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMILKPLSS HHVSNFRLSV SFLHSVALSD AKVPVEEEGD DAETVFRMIN GSNLQVELKE SLSSSGIHLS KDLIDRVLKR VRFSHGNPIQ TLEFYRYASA 101: IRGFYHSSFS LDTMLYILGR NRKFDQIWEL LIETKRKDRS LISPRTMQVV LGRVAKLCSV RQTVESFWKF KRLVPDFFDT ACFNALLRTL CQEKSMTDAR 201: NVYHSLKHQF QPDLQTFNIL LSGWKSSEEA EAFFEEMKGK GLKPDVVTYN SLIDVYCKDR EIEKAYKLID KMREEEETPD VITYTTVIGG LGLIGQPDKA 301: REVLKEMKEY GCYPDVAAYN AAIRNFCIAR RLGDADKLVD EMVKKGLSPN ATTYNLFFRV LSLANDLGRS WELYVRMLGN ECLPNTQSCM FLIKMFKRHE 401: KVDMAMRLWE DMVVKGFGSY SLVSDVLLDL LCDLAKVEEA EKCLLEMVEK GHRPSNVSFK RIKLLMELAN KHDEVNNLIQ KMAIFSTEIP R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)