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AT1G01730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0MVeggNOG:ENOG410Z0PJEMBL:AC009273EMBL:AF334726
EMBL:CP002684EnsemblPlants:AT1G01730EnsemblPlants:AT1G01730.1entrez:839260
GeneID:839260Gramene:AT1G01730.1hmmpanther:PTHR35459hmmpanther:PTHR35459:SF2
KEGG:ath:AT1G01730OMA:EANPNETPhylomeDB:Q9LQ83PIR:G86148
Proteomes:UP000006548RefSeq:NP_563634.1TAIR:AT1G01730UniGene:At.20675
UniProt:Q9LQ83
Coordinates (TAIR10) chr1:+:271002..271872
Molecular Weight (calculated) 24307.60 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.69
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSTSPATR VTEPPPAATS SLPAQAPPLP TSADQRSAEL PSPAQPAQMT APPSTVTTDP SSRGRKRALE ANLQIESSNY YKMRLLVKDL RPHVLEVLRT
101: PDLRNSKAVI EIQEKMKLML QLYEEMIGES PKREKTAKSD SLSNGKATTT TTTTTSVLRS SETEKHSSDG DGDKVVGGSA FGWNFITSGG PGTEPVYSGM
201: SKEEYRSSHP IMQVEAELEL PNTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)