AT1G01650.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.825 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SIGNAL PEPTIDE PEPTIDASE-LIKE 4 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:233188..236537 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44627.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.66 | ||||||||||||||||||||||||||||||||
| Length | 398 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVCEKGENVL DITIPVVMLP VDAGRSLENI VKSNAIVTLQ LYSPKRPAVD VAEVFLWLMA VGTILCASYW SAWTVREEAI EQDKLLKDGS DELLQLSTTS 101: SRGVVEVTVI SAILFVVVAS CFLIMLYKLM SFWFIEVLVV LFCIGGVEGL QTCLVSLLSC FRWFRRFGES YVKVPFLGAV SYLTLAICPF CIAFAVFWAV 201: KRQYSYAWIG QDILGISLII TVLQIVRVPN LKVGFVLLSC AFMYDIFWVF VSKWWFRESV MIVVARGDRS GEDGIPMLLK IPRMFDPWGG YSIIGFGDII 301: LPGLLVTFAL RYDWLANKRL KSGYFLGTMS AYGLGLLITY IALNLMDGHG QPALLYIVPF ILGTLFVLGH KRGDLKTLWT TGEPDRPCPH VRLQPQSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)