AT1G01620.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plasma membrane intrinsic protein 1C | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plasma membrane intrinsic protein 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10489 Blast hits to 10479 proteins in 2194 species: Archae - 80; Bacteria - 5080; Metazoa - 1452; Fungi - 437; Plants - 2488; Viruses - 2; Other Eukaryotes - 950 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:225986..226960 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22519.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.01 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 214 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVKRAPNMC ASVGIQGIAW AFGGMIFALV YCTAGISGGH INPAVTFGLF LARKLSLTRA VFYIVMQCLG AICGAGVVKG FQPNPYQTLG GGANTVAHGY 101: TKGSGLGAEI IGTFVLVYTV FSATDAKRSA RDSHVPILAP LPIGFAVFLV HLATIPITGT GINPARSLGA AIIYNKDHAW DDHWIFWVGP FIGAALAALY 201: HQLVIRAIPF KSRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)