AT1G01160.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GRF1-interacting factor 2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:72583..73883 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24884.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||
| Length | 229 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKM LGGSGNFESG FQEWTLKLDA CLMLLFCTFS WLDYLDENKK LIMAIMENQN LGKLAECAQY QALLQKNLMY 101: LAAIADAQPP PPTPGPSPST AVAAQMATPH SGMQPPSYFM QHPQASPAGI FAPRGPLQFG SPLQFQDPQQ QQQIHQQAMQ GHMGIRPMGM TNNGMQHAMQ 201: QPETGLGGNV GLRGGKQDGA DGQGKDDGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)