AT1G01060.5
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:33992..36836 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 69945.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||
| Length | 643 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEELGNELKN ILGQRLLFRS EVMHKSSSQS HPYGNQTSLP YRTGHEVTLS SLPRKIRFGK AHSFWFTFQL EKEAEVKGIP VCQALDIEIP PPRPKRKPNT 101: PYPRKPGNNG TSSSQVSSAK DAKLVSSASS SQLNQAFLDL EKMPFSEKTS TGKENQDENC SGVSTVNKYP LPTKQVSGDI ETSKTSTVDN AVQDVPKKNK 201: DKDGNDGTTV HSMQNYPWHF HADIVNGNIA KCPQNHPSGM VSQDFMFHPM REETHGHANL QATTASATTT ASHQAFPACH SQDDYRSFLQ ISSTFSNLIM 301: STLLQNPAAH AAATFAASVW PYASVGNSGD SSTPMSSSPP SITAIAAATV AAATAWWASH GLLPVCAPAP ITCVPFSTVA VPTPAMTEMD TVENTQPFEK 401: QNTALQDQNL ASKSPASSSD DSDETGVTKL NADSKTNDDK IEEVVVTAAV HDSNTAQKKN LVDRSSCGSN TPSGSDAETD ALDKMEKDKE DVKETDENQP 501: DVIELNNRKI KMRDNNSNNN ATTDSWKEVS EEGRIAFQAL FARERLPQSF SPPQVAENVN RKQSDTSMPL APNFKSQDSC AADQEGVVMI GVGTCKSLKT 601: RQTGFKPYKR CSMEVKESQV GNINNQSDEK VCKRLRLEGE AST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)